RBM28 protein (Pogona vitticeps) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

RBM28

RNA-binding protein 28. (738 aa)

Predicted Functional Partners:

DDX27

0.990

NIFK

0.990

EBNA1BP2

0.990

CEBPZ

0.990

NOC2L

0.989

RPF2

0.987

GTPBP4

0.987

PDCD11

0.986

DDX24

0.984

BRIX1

0.981

Your Current Organism:

Pogona vitticeps

NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BRIX1	CEBPZ	ENSPVIP00000019526	ENSPVIP00000031813	Ribosome biogenesis protein BRX1 homolog.	CCAAT/enhancer-binding protein zeta isoform X1.	0.978
BRIX1	DDX24	ENSPVIP00000019526	ENSPVIP00000003947	Ribosome biogenesis protein BRX1 homolog.	ATP-dependent RNA helicase DDX24 isoform X1.	0.883
BRIX1	DDX27	ENSPVIP00000019526	ENSPVIP00000001635	Ribosome biogenesis protein BRX1 homolog.	Probable ATP-dependent RNA helicase DDX27.	0.898
BRIX1	EBNA1BP2	ENSPVIP00000019526	ENSPVIP00000030437	Ribosome biogenesis protein BRX1 homolog.	Probable rRNA-processing protein EBP2.	0.997
BRIX1	GTPBP4	ENSPVIP00000019526	ENSPVIP00000003783	Ribosome biogenesis protein BRX1 homolog.	Nucleolar GTP-binding protein 1 isoform X1.	0.989
BRIX1	NIFK	ENSPVIP00000019526	ENSPVIP00000012226	Ribosome biogenesis protein BRX1 homolog.	MKI67 FHA domain-interacting nucleolar phosphoprotein.	0.991
BRIX1	NOC2L	ENSPVIP00000019526	ENSPVIP00000029676	Ribosome biogenesis protein BRX1 homolog.	Nucleolar complex protein 2 homolog.	0.989
BRIX1	PDCD11	ENSPVIP00000019526	ENSPVIP00000015300	Ribosome biogenesis protein BRX1 homolog.	Programmed cell death 11.	0.979
BRIX1	RBM28	ENSPVIP00000019526	ENSPVIP00000002137	Ribosome biogenesis protein BRX1 homolog.	RNA-binding protein 28.	0.981
BRIX1	RPF2	ENSPVIP00000019526	ENSPVIP00000001780	Ribosome biogenesis protein BRX1 homolog.	Ribosome production factor 2 homolog isoform X1.	0.994
CEBPZ	BRIX1	ENSPVIP00000031813	ENSPVIP00000019526	CCAAT/enhancer-binding protein zeta isoform X1.	Ribosome biogenesis protein BRX1 homolog.	0.978
CEBPZ	DDX24	ENSPVIP00000031813	ENSPVIP00000003947	CCAAT/enhancer-binding protein zeta isoform X1.	ATP-dependent RNA helicase DDX24 isoform X1.	0.973
CEBPZ	DDX27	ENSPVIP00000031813	ENSPVIP00000001635	CCAAT/enhancer-binding protein zeta isoform X1.	Probable ATP-dependent RNA helicase DDX27.	0.959
CEBPZ	EBNA1BP2	ENSPVIP00000031813	ENSPVIP00000030437	CCAAT/enhancer-binding protein zeta isoform X1.	Probable rRNA-processing protein EBP2.	0.982
CEBPZ	GTPBP4	ENSPVIP00000031813	ENSPVIP00000003783	CCAAT/enhancer-binding protein zeta isoform X1.	Nucleolar GTP-binding protein 1 isoform X1.	0.987
CEBPZ	NIFK	ENSPVIP00000031813	ENSPVIP00000012226	CCAAT/enhancer-binding protein zeta isoform X1.	MKI67 FHA domain-interacting nucleolar phosphoprotein.	0.965
CEBPZ	NOC2L	ENSPVIP00000031813	ENSPVIP00000029676	CCAAT/enhancer-binding protein zeta isoform X1.	Nucleolar complex protein 2 homolog.	0.997
CEBPZ	PDCD11	ENSPVIP00000031813	ENSPVIP00000015300	CCAAT/enhancer-binding protein zeta isoform X1.	Programmed cell death 11.	0.993
CEBPZ	RBM28	ENSPVIP00000031813	ENSPVIP00000002137	CCAAT/enhancer-binding protein zeta isoform X1.	RNA-binding protein 28.	0.990
CEBPZ	RPF2	ENSPVIP00000031813	ENSPVIP00000001780	CCAAT/enhancer-binding protein zeta isoform X1.	Ribosome production factor 2 homolog isoform X1.	0.989