Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
PDCD2Pre-rRNA-processing protein TSR4. (433 aa)    
Predicted Functional Partners:
FAM120B
Family with sequence similarity 120B.
      
 0.906
PSMB1
Proteasome subunit beta type-1.
      
 0.821
ENSPVIP00000009521
annotation not available
   
 
 0.759
RPS2
Small subunit ribosomal protein S2e.
   
 
 0.759
ZNF277
Zinc finger protein 277.
   
 
 0.758
LTV1
Protein LTV1 homolog.
   
  
 0.734
PNO1
RNA-binding protein PNO1.
   
  
 0.727
BCCIP
BRCA2 and CDKN1A-interacting protein isoform X1.
   
  
 0.696
FAIM
Fas apoptotic inhibitory molecule 1 isoform X1.
      
 0.618
MMAB
Cob(I)yrinic acid a,c-diamide adenosyltransferase, mitochondrial.
      
 0.597
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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