STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SLC25A40Solute carrier family 25, member 39/40. (339 aa)    
Predicted Functional Partners:
RUNDC3B
RUN domain-containing protein 3B isoform X1.
      
 0.583
CNOT4
CCR4-NOT transcription complex subunit 4 isoform X1.
      
 0.485
CROT
Peroxisomal carnitine O-octanoyltransferase isoform X1.
      
 0.483
ISCA1
Iron-sulfur cluster assembly 1.
   
  
 0.476
LOC110089284
Transmembrane protein 14C-like.
   
  
 0.467
LOC110089967
RNA-binding protein 4B-like isoform X1.
      
 0.439
RUNDC3A
RUN domain-containing protein 3A isoform X1.
      
 0.436
TMCO1
Calcium load-activated calcium channel.
      
 0.435
SRRM1
Serine/arginine repetitive matrix protein 1 isoform X1.
      
 0.435
TBC1D12
TBC1 domain family member 12.
      
 0.431
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
Server load: medium (52%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.