STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LIMD1LIM domain-containing protein 1. (699 aa)    
Predicted Functional Partners:
DDX6
Probable ATP-dependent RNA helicase DDX6.
    
 0.895
DICER1
Endoribonuclease Dicer.
     
 0.895
DCP2
M7GpppN-mRNA hydrolase isoform X1.
     
 0.888
VHL
Von Hippel-Lindau disease tumor suppressor.
    
 0.712
HAUS8
HAUS augmin-like complex subunit 8.
    
 0.711
LATS1
Serine/threonine-protein kinase LATS1 isoform X1.
    
 
 0.700
LOC110089353
Carboxyl-terminal PDZ ligand of neuronal nitric oxide synthase protein-like isoform X1.
    
 
 0.686
ENSPVIP00000001890
annotation not available
    
 0.655
AGO2
Eukaryotic translation initiation factor 2C.
    
 0.655
EIF4E
Eukaryotic translation initiation factor 4E isoform X1.
     
 0.655
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.