STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FAT4Protocadherin Fat 4. (5004 aa)    
Predicted Functional Partners:
CSPG4
Chondroitin sulfate proteoglycan 4.
      
 0.812
APOB
LOW QUALITY PROTEIN: apolipoprotein B-100.
   
  
 0.772
PTGER4
Prostaglandin E2 receptor EP4 subtype.
      
 0.747
SETX
Senataxin.
      
 0.745
CTNNB1
Catenin beta-1 isoform X1.
    
 0.744
JUP
Junction plakoglobin isoform X1.
    
 0.696
RHOV
Rho-related GTP-binding protein RhoV.
    
 0.684
CKAP5
Cytoskeleton-associated protein 5 isoform X1.
      
 0.674
ADAMTS3
ADAM metallopeptidase with thrombospondin type 1 motif 3.
    
 
 0.613
GPATCH8
G patch domain-containing protein 8 isoform X1.
      
 0.598
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.