Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FAT4Protocadherin Fat 4. (5004 aa)    
Predicted Functional Partners:
GDNF
Glial cell derived neurotrophic factor.
      
 0.905
RHOV
Rho-related GTP-binding protein RhoV.
    
 0.814
APOB
LOW QUALITY PROTEIN: apolipoprotein B-100.
      
 0.797
CSPG4
Chondroitin sulfate proteoglycan 4.
      
 0.796
CTNNB1
Catenin beta-1 isoform X1.
    
 0.781
WWTR1
WW domain-containing transcription regulator protein 1.
    
 
 0.696
ENSPVIP00000027031
annotation not available
      
 0.696
PTGER4
Prostaglandin E2 receptor EP4 subtype.
      
 0.657
DCHS2
Protocadherin-16/23.
   
 
 0.657
DCHS1
Protocadherin-16/23.
   
 
 0.657
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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