STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PDLIM1PDZ and LIM domain protein 1 isoform X1. (391 aa)    
Predicted Functional Partners:
SORBS1
Sorbin and SH3 domain containing 1.
    
 0.742
BLOC1S2
Biogenesis of lysosome-related organelles complex 1 subunit 2.
   
  
 0.682
PKD2L1
Polycystin 2 like 1, transient receptor potential cation channel.
   
 
 0.681
CHUK
Inhibitor of nuclear factor kappa-B kinase subunit alpha.
    
 0.646
PDLIM3
PDZ and LIM domain 3.
  
  
 
0.610
SMTN
Smoothelin.
   
 
 0.603
PDLIM7
PDZ and LIM domain 7.
   
 
0.587
EHBP1
EH domain-binding protein 1 isoform X1.
   
 0.544
EHBP1L1
EH domain-binding protein 1-like protein 1.
   
 0.544
PTK2
Focal adhesion kinase 1 isoform X1.
    
 0.541
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.