VSTM2B protein (Pogona vitticeps) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

VSTM2B

V-set and transmembrane domain-containing protein 2B. (178 aa)

Predicted Functional Partners:

LMCD1

0.695

CRTAC1

0.513

ARID5A

0.481

WHRN

0.479

TNFAIP8L3

0.468

FGL1

0.438

HPSE

0.434

ALDH1A3

0.405

CHODL

0.400

Your Current Organism:

Pogona vitticeps

NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALDH1A3	VSTM2B	ENSPVIP00000005320	ENSPVIP00000002684	Aldehyde dehydrogenase family 1 member A3.	V-set and transmembrane domain-containing protein 2B.	0.405
ARID5A	VSTM2B	ENSPVIP00000024223	ENSPVIP00000002684	AT-rich interaction domain 5A.	V-set and transmembrane domain-containing protein 2B.	0.481
CHODL	VSTM2B	ENSPVIP00000019035	ENSPVIP00000002684	Chondrolectin isoform X1.	V-set and transmembrane domain-containing protein 2B.	0.400
CRTAC1	VSTM2B	ENSPVIP00000005073	ENSPVIP00000002684	Cartilage acidic protein 1 isoform X1.	V-set and transmembrane domain-containing protein 2B.	0.513
FGL1	VSTM2B	ENSPVIP00000001300	ENSPVIP00000002684	Fibrinogen-like protein 1.	V-set and transmembrane domain-containing protein 2B.	0.438
HPSE	VSTM2B	ENSPVIP00000010010	ENSPVIP00000002684	Heparanase.	V-set and transmembrane domain-containing protein 2B.	0.434
LMCD1	VSTM2B	ENSPVIP00000000035	ENSPVIP00000002684	LIM and cysteine-rich domains protein 1 isoform X1.	V-set and transmembrane domain-containing protein 2B.	0.695
TNFAIP8L3	VSTM2B	ENSPVIP00000034135	ENSPVIP00000002684	Tumor necrosis factor alpha-induced protein 8-like protein 3.	V-set and transmembrane domain-containing protein 2B.	0.468
VSTM2B	ALDH1A3	ENSPVIP00000002684	ENSPVIP00000005320	V-set and transmembrane domain-containing protein 2B.	Aldehyde dehydrogenase family 1 member A3.	0.405
VSTM2B	ARID5A	ENSPVIP00000002684	ENSPVIP00000024223	V-set and transmembrane domain-containing protein 2B.	AT-rich interaction domain 5A.	0.481
VSTM2B	CHODL	ENSPVIP00000002684	ENSPVIP00000019035	V-set and transmembrane domain-containing protein 2B.	Chondrolectin isoform X1.	0.400
VSTM2B	CRTAC1	ENSPVIP00000002684	ENSPVIP00000005073	V-set and transmembrane domain-containing protein 2B.	Cartilage acidic protein 1 isoform X1.	0.513
VSTM2B	FGL1	ENSPVIP00000002684	ENSPVIP00000001300	V-set and transmembrane domain-containing protein 2B.	Fibrinogen-like protein 1.	0.438
VSTM2B	HPSE	ENSPVIP00000002684	ENSPVIP00000010010	V-set and transmembrane domain-containing protein 2B.	Heparanase.	0.434
VSTM2B	LMCD1	ENSPVIP00000002684	ENSPVIP00000000035	V-set and transmembrane domain-containing protein 2B.	LIM and cysteine-rich domains protein 1 isoform X1.	0.695
VSTM2B	TNFAIP8L3	ENSPVIP00000002684	ENSPVIP00000034135	V-set and transmembrane domain-containing protein 2B.	Tumor necrosis factor alpha-induced protein 8-like protein 3.	0.468
VSTM2B	WHRN	ENSPVIP00000002684	ENSPVIP00000031435	V-set and transmembrane domain-containing protein 2B.	Whirlin.	0.479
WHRN	VSTM2B	ENSPVIP00000031435	ENSPVIP00000002684	Whirlin.	V-set and transmembrane domain-containing protein 2B.	0.479