Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LMO4LIM domain transcription factor LMO4. (195 aa)    
Predicted Functional Partners:
RBBP8
DNA endonuclease RBBP8.
    
 
 0.905
LOC110071890
Isopentenyl-diphosphate Delta-isomerase 1.
    
   0.860
LDB1
LIM domain-binding protein 1 isoform X1.
   
 0.854
LDB2
LIM domain-binding protein 2 isoform X1.
   
 0.854
BRCA1
Breast cancer type 1 susceptibility protein.
    
 
 0.656
SSBP3
Single stranded DNA binding protein 3.
    
 
 0.618
SSBP4
Single-stranded DNA-binding protein 4 isoform X1.
    
 
 0.618
SSBP2
Single-stranded DNA-binding protein 2 isoform X1.
    
 
 0.618
ISL2
Insulin gene enhancer protein ISL-2.
    
   0.612
ISL1
Insulin gene enhancer protein ISL-1.
    
   0.612
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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