Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DDX20Probable ATP-dependent RNA helicase DDX20. (772 aa)    
Predicted Functional Partners:
GEMIN4
Gem-associated protein 4 isoform X1.
   
 0.999
GEMIN5
Gem associated protein 5.
   
 0.998
GEMIN7
Gem associated protein 7.
    
 0.997
GEMIN8
Gem associated protein 8.
    
 0.996
GEMIN2
Gem-associated protein 2 isoform X1.
   
 0.994
SMN1
Survival motor neuron protein.
    
 0.986
SNRPF
Small nuclear ribonucleoprotein F.
   
 0.980
SNRPE
Small nuclear ribonucleoprotein E.
   
 0.974
STRAP
Serine-threonine kinase receptor-associated protein.
    
 
 0.966
SPATA6L
Spermatogenesis associated 6-like protein.
   
 0.953
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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