Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CDK9Cyclin dependent kinase 9. (360 aa)    
Predicted Functional Partners:
CCNT1
Cyclin-T1.
   
 0.999
CCNT2
Cyclin-T2 isoform X1.
   
 0.998
AFF4
AF4/FMR2 family member 4 isoform X1.
    
 0.998
SUPT5H
Transcription elongation factor SPT5.
    
 0.998
POLR2A
DNA-directed RNA polymerase II subunit RPB1.
    
 0.990
SUPT4H1
SPT4 homolog, DSIF elongation factor subunit.
     
 0.988
CCNK
Cyclin-K isoform X1.
   
 0.984
NELFE
Negative elongation factor E.
    
 0.983
MEPCE
7SK snRNA methylphosphate capping enzyme.
    
 
 0.982
LARP7
La-related protein 7.
   
 0.981
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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