Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPERibulose-phosphate 3-epimerase isoform X1. (228 aa)    
Predicted Functional Partners:
RPIA
Ribose 5-phosphate isomerase A.
  
 0.995
TKTL2
Transketolase-like protein 1.
 
 0.991
TKT
Transketolase.
 
 0.990
PGD
6-phosphogluconate dehydrogenase, decarboxylating.
   
 0.990
XYLB
Xylulose kinase isoform X1.
   
 0.968
FGGY
FGGY carbohydrate kinase domain containing.
 
   
 0.925
TALDO1
Transaldolase.
  
 0.870
BCKDHA
2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial.
     
 0.812
H6PD
GDH/6PGL endoplasmic bifunctional protein.
  
 
 0.805
ENSPVIP00000000950
annotation not available
  
 0.797
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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