STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PDCD6IPProgrammed cell death 6 interacting protein. (869 aa)    
Predicted Functional Partners:
CHMP4B
Charged multivesicular body protein 4b.
   
 0.975
CHMP4C
Charged multivesicular body protein 4c.
   
 0.975
TSG101
Tumor susceptibility gene 101 protein isoform X1.
   
 0.946
CHMP4A
Charged multivesicular body protein 4a.
   
 0.941
MVB12B
Multivesicular body subunit 12B isoform X1.
     
 0.940
MVB12A
Multivesicular body subunit 12A.
   
 
 0.928
CEP55
Centrosomal protein of 55 kDa isoform X1.
    
 
 0.917
ALG2
Alpha-1,3/alpha-1,6-mannosyltransferase.
    
 
 0.857
LOC110088293
Magnesium-dependent phosphatase 1-like.
    
 0.842
VPS4A
Vacuolar protein sorting-associated protein 4A.
   
 0.745
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.