STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RNF40E3 ubiquitin-protein ligase bre-1-like. (891 aa)    
Predicted Functional Partners:
LEO1
RNA polymerase-associated protein LEO1.
   
 0.985
LOC110071800
Ubiquitin-conjugating enzyme E2 variant 1.
     
 0.895
UBE2B
Ubiquitin-conjugating enzyme E2 B.
    
 0.886
UBE2A
Ubiquitin-conjugating enzyme E2 A isoform X1.
    
 0.886
UBE2U
Ubiquitin-conjugating enzyme E2 U isoform X1.
    
 0.869
CDC73
Parafibromin.
   
 0.832
PAF1
RNA polymerase II-associated factor 1 homolog.
    
 0.818
WAC
WW domain-containing adapter protein with coiled-coil isoform X1.
   
 0.789
UBE2N
Ubiquitin-conjugating enzyme E2 N isoform X1.
    
 0.768
CTR9
CTR9 homolog, Paf1/RNA polymerase II complex component.
   
 0.761
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.