STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CHD1LChromodomain-helicase-DNA-binding protein 1-like isoform X1. (894 aa)    
Predicted Functional Partners:
PARP1
Poly [ADP-ribose] polymerase 1.
   
 0.880
LEO1
RNA polymerase-associated protein LEO1.
   
 0.844
POLE3
DNA polymerase epsilon subunit 3.
    
 0.798
BPTF
Nucleosome-remodeling factor subunit BPTF.
   
 0.785
PARP2
Poly [ADP-ribose] polymerase 2 isoform X1.
   
 0.768
XPA
DNA repair protein complementing XP-A cells isoform X1.
    
 0.753
DDB2
DNA damage-binding protein 2 isoform X1.
   
 0.740
XPC
Xeroderma pigmentosum group C-complementing protein.
   
 0.724
RPA1
Replication protein A 70 kDa DNA-binding subunit.
   
 0.702
RBBP4
Histone-binding protein RBBP4 isoform X1.
   
 0.700
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.