Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SRRM4Serine/arginine repetitive matrix 4. (578 aa)    
Predicted Functional Partners:
SLC17A8
Vesicular glutamate transporter 3.
   
  
 0.893
MYO6
Unconventional myosin-VI isoform X1.
    
 
 0.719
COCH
Cochlin.
    
 0.701
PTBP2
Polypyrimidine tract-binding protein 2 isoform X1.
      
 0.696
ENSPVIP00000033449
annotation not available
    
 0.685
SLC26A5
Solute carrier family 26, member 5.
      
 0.684
TMC1
Transmembrane channel like 1.
    
 0.657
TMC3
Transmembrane channel like 3.
    
 0.657
RBMX2
RNA-binding motif protein, X-linked 2.
    
 
 0.652
WFS1
Wolframin.
      
 0.640
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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