STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RING1E3 ubiquitin-protein ligase RNF1/2. (312 aa)    
Predicted Functional Partners:
FBXL19
F-box and leucine-rich repeat protein 19.
    
 0.977
KDM2B
Lysine demethylase 2B.
    
 0.977
KDM2A
F-box and leucine-rich repeat protein 10/11.
    
 0.977
CBX8
Chromobox protein homolog 8.
    
 0.960
CBX7
Chromobox protein homolog 7 isoform X1.
    
 0.926
BARD1
BRCA1-associated RING domain protein 1.
    
 0.922
KDM6A
Lysine-specific demethylase 6A isoform X1.
   
 0.915
PCGF5
Polycomb group RING finger protein 5 isoform X1.
    
 0.914
KDM6B
Lysine demethylase 6B.
   
 0.911
PCGF3
Polycomb group RING finger protein 3.
    
 0.909
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.