STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COL11A2Collagen type V/XI/XXIV/XXVII, alpha. (203 aa)    
Predicted Functional Partners:
COL11A1
Collagen type V/XI/XXIV/XXVII, alpha.
 
   
  0.964
COL27A1
Collagen type V/XI/XXIV/XXVII, alpha.
     
 0.915
COL24A1
Collagen type V/XI/XXIV/XXVII, alpha.
     
 0.915
ENSPVIP00000033321
annotation not available
 
   
  0.912
COL5A2
Collagen type V/XI/XXIV/XXVII, alpha.
  
  
 
0.909
COL5A1
Collagen type V/XI/XXIV/XXVII, alpha.
     
 
0.900
COL1A2
Collagen alpha-2(I) chain.
     
 
0.900
COL9A1
Collagen alpha-1(IX) chain isoform X1.
     
  0.900
COL1A1
Collagen alpha-1(I) chain.
     
 
0.900
COL5A3
Collagen type V/XI/XXIV/XXVII, alpha.
 
     0.776
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.