STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OTUD5OTU domain-containing protein 5 isoform X1. (413 aa)    
Predicted Functional Partners:
TRAF3
TNF receptor-associated factor 3 isoform X1.
    
 0.963
RPS27A
Ribosomal protein S27a.
    
 0.929
UBC
Polyubiquitin-C.
    
 0.854
LOC110072527
Ubiquitin-large subunit ribosomal protein L40e.
    
  0.714
LOC110072526
Ubiquitin-large subunit ribosomal protein L40e.
    
  0.714
ATG3
Autophagy related 3.
   
  
 0.608
SART1
Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.
   
    0.602
USP11
Ubiquitin specific peptidase 11.
    
 
 0.567
USP47
Ubiquitin carboxyl-terminal hydrolase 47 isoform X1.
      
 0.551
MYSM1
Histone H2A deubiquitinase MYSM1 isoform X1.
   
  
 0.487
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.