Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
FUBP1Far upstream element-binding protein 1 isoform X1. (860 aa)    
Predicted Functional Partners:
PUF60
Poly(U)-binding-splicing factor PUF60 isoform X1.
   
 
 0.888
FUBP3
Far upstream element-binding protein 3 isoform X1.
   
   0.791
YWHAZ
14-3-3 protein beta/theta/zeta.
   
  0.785
HNRNPM
Heterogeneous nuclear ribonucleoprotein M.
   
 
 0.726
QKI
Protein quaking isoform X1.
   
 
 0.684
HNRNPDL
Heterogeneous nuclear ribonucleoprotein D-like.
   
 
 0.656
EXOSC2
Exosome complex component RRP4.
   
  0.646
SMN1
Survival motor neuron protein.
    
 
 0.619
TK1
Thymidine kinase, cytosolic.
      
 0.618
AXL
Tyrosine-protein kinase receptor UFO isoform X1.
    
 0.618
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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