Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CDC40Pre-mRNA-processing factor 17. (642 aa)    
Predicted Functional Partners:
DHX38
Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16.
   
 0.998
PRPF18
Pre-mRNA-splicing factor 18 isoform X1.
   
 0.997
SYF2
Pre-mRNA-splicing factor SYF2.
    
 0.996
SLU7
Pre-mRNA-processing factor SLU7.
   
 0.995
CWC25
Pre-mRNA-splicing factor CWC25 homolog isoform X1.
    
 0.994
CWC22
Pre-mRNA-splicing factor CWC22 homolog.
   
 0.994
PPIL1
Peptidyl-prolyl cis-trans isomerase-like 1 isoform X1.
    
 0.992
CCDC12
Coiled-coil domain containing 12.
    
  0.991
YJU2
Coiled-coil domain-containing protein 94.
   
 0.983
DHX16
DEAH-box helicase 16.
   
 0.982
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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