STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HFM1Probable ATP-dependent DNA helicase HFM1. (880 aa)    
Predicted Functional Partners:
SEC63
Translocation protein SEC63 homolog.
     
 0.950
ASCC2
Activating signal cointegrator 1 complex subunit 2 isoform X1.
    
 0.949
TRIP4
Activating signal cointegrator 1 isoform X1.
    
 0.935
PRPF6
pre-mRNA processing factor 6.
   
 0.889
MLH1
DNA mismatch repair protein MLH1.
    
 0.888
ENSPVIP00000022408
annotation not available
   
 0.852
PRPF8
Pre-mRNA-processing-splicing factor 8.
   
 0.852
SNW1
SNW domain-containing protein 1.
    
 0.840
XAB2
Pre-mRNA-splicing factor SYF1.
    
 0.832
SF3B3
Splicing factor 3B subunit 3.
   
 0.830
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.