Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
HFM1Probable ATP-dependent DNA helicase HFM1. (880 aa)    
Predicted Functional Partners:
ASCC2
Activating signal cointegrator 1 complex subunit 2 isoform X1.
    
 0.901
TRIP4
Activating signal cointegrator 1 isoform X1.
   
 0.900
MLH1
DNA mismatch repair protein MLH1.
    
 
 0.879
ZNF598
E3 ubiquitin-protein ligase ZNF598.
    
 0.794
PMS1
PMS1 protein homolog 1 isoform X1.
    
 
 0.791
SNRPF
Small nuclear ribonucleoprotein F.
   
 0.749
MCM9
DNA helicase MCM9 isoform X1.
     
 0.714
MSH4
MutS protein homolog 4 isoform X1.
   
 
 0.711
NEK9
NIMA (never in mitosis gene a)-related kinase 9.
   
 
 0.697
ENSPVIP00000022408
annotation not available
   
 0.696
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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