STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COL27A1Collagen type V/XI/XXIV/XXVII, alpha. (294 aa)    
Predicted Functional Partners:
ENSPVIP00000004220
annotation not available
 
      0.896
COL8A2
Collagen alpha-2(VIII) chain.
 
   
 0.589
COL8A1
Collagen alpha-1(VIII) chain.
 
   
 0.482
ENSPVIP00000025519
annotation not available
 
      0.480
SERPINH1
Serpin peptidase inhibitor, clade H, member 1.
   
 0.478
TEP1
Telomerase protein component 1 isoform X1.
    
 0.456
PLOD1
Procollagen-lysine,2-oxoglutarate 5-dioxygenase 1.
   
 0.447
COL6A2
Collagen alpha-2(VI) chain isoform X1.
 
 
 0.431
PCOLCE2
Procollagen C-endopeptidase enhancer 2.
    
 0.422
ENSPVIP00000002638
annotation not available
   
 0.408
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.