STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PRPF38APre-mRNA-splicing factor 38A. (312 aa)    
Predicted Functional Partners:
MFAP1
Microfibril associated protein 1.
   
 0.992
TCERG1
Transcription elongation regulator 1 isoform X1.
   
 0.926
ZMAT2
Zinc finger matrin-type protein 2 isoform X1.
   
 0.913
PRPF38B
Pre-mRNA-splicing factor 38B.
   
 
 
0.903
TCERG1L
Transcription elongation regulator 1 like.
   
 0.893
RNPS1
RNA-binding protein with serine-rich domain 1 isoform X1.
   
 
 0.893
SRSF3
Splicing factor, arginine/serine-rich 3.
   
 
 0.873
IK
IK cytokine.
   
 
 0.859
UBL5
Ubiquitin like 5.
    
 0.857
SMU1
WD40 repeat-containing protein SMU1.
   
 
 0.850
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.