Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
NUB1NEDD8 ultimate buster 1 isoform X1. (635 aa)    
Predicted Functional Partners:
NEDD8
Ubiquitin-like protein Nedd8.
    
 0.998
PSMD4
26S proteasome non-ATPase regulatory subunit 4 isoform X1.
   
 
 0.939
PSMD2
26S proteasome non-ATPase regulatory subunit 2.
    
 0.907
PSMD7
26S proteasome non-ATPase regulatory subunit 7.
    
 0.881
PSMD11
26S proteasome non-ATPase regulatory subunit 11.
    
 0.865
PSMC2
26S proteasome regulatory subunit T1.
    
 0.863
PSMC6
26S proteasome regulatory subunit T4.
    
  0.860
PSMC5
26S protease regulatory subunit 8 isoform X1.
    
  0.843
PSMA2
Proteasome subunit alpha type-2.
    
  0.843
PSMD3
26S proteasome non-ATPase regulatory subunit 3.
    
 0.834
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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