Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LMO1Rhombotin-1 isoform X1. (156 aa)    
Predicted Functional Partners:
TAL1
T-cell acute lymphocytic leukemia protein 1 isoform X1.
    
 0.879
LDB1
LIM domain-binding protein 1 isoform X1.
    
 0.854
LDB2
LIM domain-binding protein 2 isoform X1.
    
 0.854
GATA3
Trans-acting T-cell-specific transcription factor GATA-3 isoform X1.
    
 0.676
LHX9
LIM/homeobox protein Lhx9 isoform X1.
   
 
 0.628
LHX2
LIM/homeobox protein Lhx2.
   
 
 0.628
GATA1
GATA binding protein 1.
    
 0.610
GATA2
Endothelial transcription factor GATA-2 isoform X1.
    
 0.606
LFNG
Beta-1,3-N-acetylglucosaminyltransferase lunatic fringe.
    
 
 0.602
RFNG
RFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase.
    
 
 0.602
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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