STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VPS41Vacuolar protein sorting-associated protein 41 homolog isoform X1. (854 aa)    
Predicted Functional Partners:
VPS11
Vacuolar protein sorting-associated protein 11 homolog isoform X1.
   
 0.999
VPS16
VPS16 core subunit of CORVET and HOPS complexes.
   
 0.998
VPS39
Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39.
   
 0.998
VPS33A
Vacuolar protein sorting-associated protein 33A.
   
 0.997
VPS18
Vacuolar protein sorting-associated protein 18 homolog.
   
 0.994
TGFBRAP1
Transforming growth factor beta receptor associated protein 1.
   
 0.974
RAB7A
Ras-related protein Rab-7A.
    
 0.964
ENSPVIP00000005662
annotation not available
   
 0.952
RAB7B
Ras-related protein Rab-7B.
    
 0.949
VPS8
Vacuolar protein sorting-associated protein 8 homolog isoform X1.
   
0.944
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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