Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SEMA4FSemaphorin-4F. (735 aa)    
Predicted Functional Partners:
NRP1
Neuropilin-1 isoform X1.
    
 0.600
PLXNB1
Plexin-B1.
    
 0.554
PLXNB2
Plexin-B2.
    
 0.554
PLXNB3
Plexin-B3.
    
 0.554
PLXND1
Plexin-D1.
    
 0.531
MET
Hepatocyte growth factor receptor isoform X1.
   
 0.504
MST1R
Macrophage stimulating 1 receptor.
   
 0.504
PLXNC1
Plexin-C1 isoform X1.
    
 0.456
ENSPVIP00000000956
Plexin-A4.
    
 0.424
PLXNA1
Plexin-A1 isoform X1.
    
 0.424
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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