Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
SERBP1Plasminogen activator inhibitor 1 RNA-binding protein isoform X1. (457 aa)    
Predicted Functional Partners:
RPS3
Small subunit ribosomal protein S3e.
   
 
 0.979
RACK1
Guanine nucleotide-binding protein subunit beta-2-like 1 protein.
   
 
 0.974
RPS27A
Ribosomal protein S27a.
   
 
 0.965
RPS15
Small subunit ribosomal protein S15e.
   
 
 0.964
RPS28
Small subunit ribosomal protein S28e.
   
 
 0.962
RPL34
Large subunit ribosomal protein L34e.
   
 
 0.956
RPS20
Small subunit ribosomal protein S20e.
   
 
 0.953
NCL
Nucleolin.
   
 
 0.952
RPL4
Large subunit ribosomal protein L4e.
   
 
 0.946
RPL5
Large subunit ribosomal protein L5e.
   
 
 0.943
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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