STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE65Retinoid isomerohydrolase / lutein isomerase. (533 aa)    
Predicted Functional Partners:
LRAT
Phosphatidylcholine-retinol O-acyltransferase.
     
 0.938
RDH10
Retinol dehydrogenase 10.
     
 0.924
DGAT1
Diacylglycerol O-acyltransferase 1.
   
 
 0.920
RDH5
11-cis retinol dehydrogenase.
     
 0.908
PNPLA4
Patatin-like phospholipase domain-containing protein 4 isoform X1.
     
 0.904
LOC110071826
Retinol dehydrogenase 10-like.
     
 0.900
ARHGAP11A
Rho GTPase-activating protein 11A isoform X1.
   
 
 0.590
ASPM
Abnormal spindle-like microcephaly-associated protein.
   
  
 0.563
SKP1
S-phase kinase-associated protein 1.
    
 0.560
ENSPVIP00000015990
annotation not available
   
  
 0.532
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.