Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VPS52VPS52 subunit of GARP complex. (679 aa)    
Predicted Functional Partners:
VPS51
LOW QUALITY PROTEIN: vacuolar protein sorting-associated protein 51 homolog.
   
 0.998
VPS53
Vacuolar protein sorting-associated protein 53 homolog.
   
 0.998
VPS54
Vacuolar protein sorting-associated protein 54 isoform X1.
    
 0.993
VPS50
Syndetin.
   
 
 0.976
RNF41
E3 ubiquitin-protein ligase NRDP1.
    
 
 0.962
EIPR1
EARP complex and GARP complex interacting protein 1.
    
 
 0.957
ENSPVIP00000014724
annotation not available
   
 0.846
COG1
Conserved oligomeric Golgi complex subunit 1.
   
 
 0.841
TMF1
TATA element modulatory factor.
     
 0.830
COG7
Conserved oligomeric Golgi complex subunit 7.
     
 0.808
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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