Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PLXNB1Plexin-B1. (2231 aa)    
Predicted Functional Partners:
SEMA4D
Semaphorin-4D-like.
    
 0.877
RND1
Rho-related GTP-binding protein Rho6.
    
 0.839
RND3
Rho-related GTP-binding protein RhoE.
    
 0.800
MET
Hepatocyte growth factor receptor isoform X1.
    
 0.797
RND2
Rho-related GTP-binding protein RhoN.
    
 0.737
NRP1
Neuropilin-1 isoform X1.
   
 0.687
MST1R
Macrophage stimulating 1 receptor.
    
  0.679
SEMA5A
Semaphorin-5A isoform X1.
    
 0.663
SEMA5B
Semaphorin-5B.
    
 0.663
ARHGEF1
Rho guanine nucleotide exchange factor 1.
    
 0.617
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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