Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
APOB | LOC110071310 | ENSPVIP00000014399 | ENSPVIP00000004742 | LOW QUALITY PROTEIN: apolipoprotein B-100. | Apolipoprotein A-IV-like isoform X1. | 0.984 |
APOB | SCARB1 | ENSPVIP00000014399 | ENSPVIP00000004975 | LOW QUALITY PROTEIN: apolipoprotein B-100. | Scavenger receptor class B member 1 isoform X1. | 0.894 |
APOB | TLR4 | ENSPVIP00000014399 | ENSPVIP00000019818 | LOW QUALITY PROTEIN: apolipoprotein B-100. | Toll-like receptor 4 isoform X1. | 0.603 |
BCO1 | SCARB1 | ENSPVIP00000017152 | ENSPVIP00000004975 | Beta,beta-carotene 15,15'-dioxygenase. | Scavenger receptor class B member 1 isoform X1. | 0.661 |
CAV3 | LYN | ENSPVIP00000025886 | ENSPVIP00000010283 | Caveolin-3-like. | Tyrosine-protein kinase Lyn isoform X1. | 0.488 |
CAV3 | SCARB1 | ENSPVIP00000025886 | ENSPVIP00000004975 | Caveolin-3-like. | Scavenger receptor class B member 1 isoform X1. | 0.613 |
CAV3 | TLR4 | ENSPVIP00000025886 | ENSPVIP00000019818 | Caveolin-3-like. | Toll-like receptor 4 isoform X1. | 0.610 |
CD47 | SCARB1 | ENSPVIP00000004723 | ENSPVIP00000004975 | CD47 antigen (Rh-related antigen, integrin-associated signal transducer). | Scavenger receptor class B member 1 isoform X1. | 0.682 |
CD47 | THBS1 | ENSPVIP00000004723 | ENSPVIP00000020933 | CD47 antigen (Rh-related antigen, integrin-associated signal transducer). | Thrombospondin-1 isoform X1. | 0.970 |
CD47 | THBS2 | ENSPVIP00000004723 | ENSPVIP00000002266 | CD47 antigen (Rh-related antigen, integrin-associated signal transducer). | Thrombospondin 2/3/4/5. | 0.946 |
CD47 | TLR4 | ENSPVIP00000004723 | ENSPVIP00000019818 | CD47 antigen (Rh-related antigen, integrin-associated signal transducer). | Toll-like receptor 4 isoform X1. | 0.418 |
LOC110071310 | APOB | ENSPVIP00000004742 | ENSPVIP00000014399 | Apolipoprotein A-IV-like isoform X1. | LOW QUALITY PROTEIN: apolipoprotein B-100. | 0.984 |
LOC110071310 | SCARB1 | ENSPVIP00000004742 | ENSPVIP00000004975 | Apolipoprotein A-IV-like isoform X1. | Scavenger receptor class B member 1 isoform X1. | 0.883 |
LYN | CAV3 | ENSPVIP00000010283 | ENSPVIP00000025886 | Tyrosine-protein kinase Lyn isoform X1. | Caveolin-3-like. | 0.488 |
LYN | SCARB1 | ENSPVIP00000010283 | ENSPVIP00000004975 | Tyrosine-protein kinase Lyn isoform X1. | Scavenger receptor class B member 1 isoform X1. | 0.644 |
PDZK1 | SCARB1 | ENSPVIP00000013782 | ENSPVIP00000004975 | Na(+)/H(+) exchange regulatory cofactor NHE-RF3. | Scavenger receptor class B member 1 isoform X1. | 0.640 |
SCARB1 | APOB | ENSPVIP00000004975 | ENSPVIP00000014399 | Scavenger receptor class B member 1 isoform X1. | LOW QUALITY PROTEIN: apolipoprotein B-100. | 0.894 |
SCARB1 | BCO1 | ENSPVIP00000004975 | ENSPVIP00000017152 | Scavenger receptor class B member 1 isoform X1. | Beta,beta-carotene 15,15'-dioxygenase. | 0.661 |
SCARB1 | CAV3 | ENSPVIP00000004975 | ENSPVIP00000025886 | Scavenger receptor class B member 1 isoform X1. | Caveolin-3-like. | 0.613 |
SCARB1 | CD47 | ENSPVIP00000004975 | ENSPVIP00000004723 | Scavenger receptor class B member 1 isoform X1. | CD47 antigen (Rh-related antigen, integrin-associated signal transducer). | 0.682 |
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