Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
YOD1Ubiquitin thioesterase OTU1 isoform X1. (304 aa)    
Predicted Functional Partners:
VCP
Transitional endoplasmic reticulum ATPase isoform X1.
   
 0.994
LOC110082643
Transitional endoplasmic reticulum ATPase-like.
   
 0.968
PLAA
Phospholipase A-2-activating protein.
    
 
 0.927
UBXN6
UBX domain-containing protein 6 isoform X1.
    
 
 0.866
UBC
Polyubiquitin-C.
    
 
 0.865
UBE4B
Ubiquitination factor E4B.
    
 
 0.865
SPATA5
Spermatogenesis associated 5.
   
 0.820
SPATA5L1
Spermatogenesis-associated protein 5-like protein 1.
   
 0.820
ENSPVIP00000000362
annotation not available
   
 
 0.809
UFD1
Ubiquitin fusion degradation protein 1 homolog.
   
 
 0.809
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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