HSPE1 protein (Pogona vitticeps) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

HSPE1

MOB-like protein phocein. (102 aa)

Predicted Functional Partners:

HSPD1

0.999

GRPEL1

0.941

GRPEL2

0.933

CLPB

0.915

CLPP

0.904

HSPA9

0.901

MRPL12

0.874

TCP1

0.867

CCT4

0.845

FAM161A

0.845

Your Current Organism:

Pogona vitticeps

NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CCT4	CLPB	ENSPVIP00000001942	ENSPVIP00000028076	T-complex protein 1 subunit delta.	ATP-dependent Clp protease ATP-binding subunit ClpB.	0.527
CCT4	CLPP	ENSPVIP00000001942	ENSPVIP00000011629	T-complex protein 1 subunit delta.	ATP-dependent Clp protease proteolytic subunit, mitochondrial isoform X1.	0.504
CCT4	GRPEL1	ENSPVIP00000001942	ENSPVIP00000001487	T-complex protein 1 subunit delta.	GrpE protein homolog 1, mitochondrial.	0.642
CCT4	GRPEL2	ENSPVIP00000001942	ENSPVIP00000028147	T-complex protein 1 subunit delta.	GrpE protein homolog 2, mitochondrial.	0.642
CCT4	HSPA9	ENSPVIP00000001942	ENSPVIP00000025296	T-complex protein 1 subunit delta.	Stress-70 protein, mitochondrial.	0.537
CCT4	HSPD1	ENSPVIP00000001942	ENSPVIP00000005146	T-complex protein 1 subunit delta.	60 kDa heat shock protein, mitochondrial.	0.911
CCT4	HSPE1	ENSPVIP00000001942	ENSPVIP00000005144	T-complex protein 1 subunit delta.	MOB-like protein phocein.	0.845
CCT4	TCP1	ENSPVIP00000001942	ENSPVIP00000012709	T-complex protein 1 subunit delta.	T-complex protein 1 subunit alpha.	0.999
CLPB	CCT4	ENSPVIP00000028076	ENSPVIP00000001942	ATP-dependent Clp protease ATP-binding subunit ClpB.	T-complex protein 1 subunit delta.	0.527
CLPB	CLPP	ENSPVIP00000028076	ENSPVIP00000011629	ATP-dependent Clp protease ATP-binding subunit ClpB.	ATP-dependent Clp protease proteolytic subunit, mitochondrial isoform X1.	0.992
CLPB	FAM161A	ENSPVIP00000028076	ENSPVIP00000001973	ATP-dependent Clp protease ATP-binding subunit ClpB.	Protein FAM161A.	0.527
CLPB	GRPEL1	ENSPVIP00000028076	ENSPVIP00000001487	ATP-dependent Clp protease ATP-binding subunit ClpB.	GrpE protein homolog 1, mitochondrial.	0.939
CLPB	GRPEL2	ENSPVIP00000028076	ENSPVIP00000028147	ATP-dependent Clp protease ATP-binding subunit ClpB.	GrpE protein homolog 2, mitochondrial.	0.934
CLPB	HSPA9	ENSPVIP00000028076	ENSPVIP00000025296	ATP-dependent Clp protease ATP-binding subunit ClpB.	Stress-70 protein, mitochondrial.	0.879
CLPB	HSPD1	ENSPVIP00000028076	ENSPVIP00000005146	ATP-dependent Clp protease ATP-binding subunit ClpB.	60 kDa heat shock protein, mitochondrial.	0.802
CLPB	HSPE1	ENSPVIP00000028076	ENSPVIP00000005144	ATP-dependent Clp protease ATP-binding subunit ClpB.	MOB-like protein phocein.	0.915
CLPB	MRPL12	ENSPVIP00000028076	ENSPVIP00000018217	ATP-dependent Clp protease ATP-binding subunit ClpB.	39S ribosomal protein L12, mitochondrial.	0.623
CLPB	TCP1	ENSPVIP00000028076	ENSPVIP00000012709	ATP-dependent Clp protease ATP-binding subunit ClpB.	T-complex protein 1 subunit alpha.	0.527
CLPP	CCT4	ENSPVIP00000011629	ENSPVIP00000001942	ATP-dependent Clp protease proteolytic subunit, mitochondrial isoform X1.	T-complex protein 1 subunit delta.	0.504
CLPP	CLPB	ENSPVIP00000011629	ENSPVIP00000028076	ATP-dependent Clp protease proteolytic subunit, mitochondrial isoform X1.	ATP-dependent Clp protease ATP-binding subunit ClpB.	0.992