Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ATXN3Ataxin-3 isoform X1. (357 aa)    
Predicted Functional Partners:
PRKN
Parkin RBR E3 ubiquitin protein ligase.
    
 0.989
VCP
Transitional endoplasmic reticulum ATPase isoform X1.
   
 0.968
FOXO4
Forkhead box protein O4.
    
 0.942
RAD23B
RAD23 homolog B, nucleotide excision repair protein.
    
 0.937
RAD23A
UV excision repair protein RAD23 homolog A isoform X1.
    
 0.937
LOC110082643
Transitional endoplasmic reticulum ATPase-like.
   
 0.932
RPS27A
Ribosomal protein S27a.
    
 0.927
UBC
Polyubiquitin-C.
    
 0.918
STUB1
STIP1 homology and U-box containing protein 1.
    
 
 0.909
SPATA5
Spermatogenesis associated 5.
   
 0.843
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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