STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ATXN3Ataxin-3 isoform X1. (357 aa)    
Predicted Functional Partners:
PRKN
Parkin RBR E3 ubiquitin protein ligase.
    
 0.982
VCP
Transitional endoplasmic reticulum ATPase isoform X1.
   
 0.953
LOC110082643
Transitional endoplasmic reticulum ATPase-like.
   
 0.893
UBC
Polyubiquitin-C.
    
 0.879
RPS27A
Ribosomal protein S27a.
    
 0.873
RAD23B
RAD23 homolog B, nucleotide excision repair protein.
    
 0.857
RAD23A
UV excision repair protein RAD23 homolog A isoform X1.
    
 0.857
SPATA5
Spermatogenesis associated 5.
   
 0.850
SPATA5L1
Spermatogenesis-associated protein 5-like protein 1.
   
 0.850
STUB1
STIP1 homology and U-box containing protein 1.
    
 
 0.779
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.