STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SUPT16HFACT complex subunit SPT16. (1081 aa)    
Predicted Functional Partners:
CDC73
Parafibromin.
   
 0.999
SSRP1
Structure-specific recognition protein 1.
   
 0.999
LEO1
RNA polymerase-associated protein LEO1.
   
 0.999
CTR9
CTR9 homolog, Paf1/RNA polymerase II complex component.
   
 0.998
SUPT6H
Transcription elongation factor SPT6 isoform X1.
   
 0.997
SUPT5H
Transcription elongation factor SPT5.
   
 0.997
SUPT4H1
SPT4 homolog, DSIF elongation factor subunit.
    
 0.996
RTF1
RNA polymerase-associated protein RTF1 homolog isoform X1.
   
 0.996
PAF1
RNA polymerase II-associated factor 1 homolog.
    
 0.996
POLR2C
DNA-directed RNA polymerase II subunit RPB3.
   
 0.990
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.