STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SUPT16HFACT complex subunit SPT16. (1081 aa)    
Predicted Functional Partners:
SSRP1
Structure-specific recognition protein 1.
   
 0.999
LEO1
RNA polymerase-associated protein LEO1.
   
 0.989
SUPT6H
Transcription elongation factor SPT6 isoform X1.
   
 0.984
CTR9
CTR9 homolog, Paf1/RNA polymerase II complex component.
   
 0.981
SUPT5H
Transcription elongation factor SPT5.
   
 0.976
CDC73
Parafibromin.
   
 0.971
SUPT4H1
SPT4 homolog, DSIF elongation factor subunit.
    
 0.970
POLR2C
DNA-directed RNA polymerase II subunit RPB3.
   
 0.970
PAF1
RNA polymerase II-associated factor 1 homolog.
    
 0.968
POLR2A
DNA-directed RNA polymerase II subunit RPB1.
   
 0.967
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.