STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPGRIP1RPGR interacting protein 1. (1019 aa)    
Predicted Functional Partners:
RPGR
X-linked retinitis pigmentosa GTPase regulator.
    
 
 0.972
NPHP4
Nephrocystin-4 isoform X1.
    
 0.887
RCC1
Regulator of chromosome condensation.
    
 
 0.796
NEK8
NIMA (never in mitosis gene a)-related kinase 8.
    
 
 0.690
ENSPVIP00000032589
annotation not available
    
 0.634
SPATA7
Spermatogenesis-associated protein 7.
   
 
 0.631
WHRN
Whirlin.
      
 0.615
YARS2
Tyrosine--tRNA ligase, mitochondrial.
      
 0.588
PDE6D
Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta.
      
 0.582
IFT88
Intraflagellar transport protein 88 homolog isoform X1.
   
  
 0.581
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.