LOC110083685 protein (Pogona vitticeps) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC110083685

Pulmonary surfactant-associated protein A-like. (196 aa)

Predicted Functional Partners:

ENSPVIP00000021283

0.938

ENSPVIP00000023878

0.871

CKAP4

0.595

LOC110083680

0.532

LOC110083676

0.532

ENSPVIP00000005631

0.532

ENSPVIP00000005632

0.503

PCYT1A

0.438

TNN

0.433

TNR

0.433

Your Current Organism:

Pogona vitticeps

NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CKAP4	LOC110083685	ENSPVIP00000024996	ENSPVIP00000005644	Cytoskeleton-associated protein 4 isoform X1.	Pulmonary surfactant-associated protein A-like.	0.595
ENSPVIP00000005631	ENSPVIP00000021283	ENSPVIP00000005631	ENSPVIP00000021283	Pulmonary surfactant-associated protein D-like.	annotation not available	0.734
ENSPVIP00000005631	ENSPVIP00000023878	ENSPVIP00000005631	ENSPVIP00000023878	Pulmonary surfactant-associated protein D-like.	annotation not available	0.760
ENSPVIP00000005631	LOC110083685	ENSPVIP00000005631	ENSPVIP00000005644	Pulmonary surfactant-associated protein D-like.	Pulmonary surfactant-associated protein A-like.	0.532
ENSPVIP00000005631	TNN	ENSPVIP00000005631	ENSPVIP00000001063	Pulmonary surfactant-associated protein D-like.	Tenascin N.	0.433
ENSPVIP00000005631	TNR	ENSPVIP00000005631	ENSPVIP00000001194	Pulmonary surfactant-associated protein D-like.	Tenascin-R isoform X1.	0.434
ENSPVIP00000005632	ENSPVIP00000021283	ENSPVIP00000005632	ENSPVIP00000021283	Pulmonary surfactant-associated protein D-like.	annotation not available	0.673
ENSPVIP00000005632	ENSPVIP00000023878	ENSPVIP00000005632	ENSPVIP00000023878	Pulmonary surfactant-associated protein D-like.	annotation not available	0.703
ENSPVIP00000005632	LOC110083685	ENSPVIP00000005632	ENSPVIP00000005644	Pulmonary surfactant-associated protein D-like.	Pulmonary surfactant-associated protein A-like.	0.503
ENSPVIP00000005632	TNN	ENSPVIP00000005632	ENSPVIP00000001063	Pulmonary surfactant-associated protein D-like.	Tenascin N.	0.433
ENSPVIP00000005632	TNR	ENSPVIP00000005632	ENSPVIP00000001194	Pulmonary surfactant-associated protein D-like.	Tenascin-R isoform X1.	0.434
ENSPVIP00000021283	ENSPVIP00000005631	ENSPVIP00000021283	ENSPVIP00000005631	annotation not available	Pulmonary surfactant-associated protein D-like.	0.734
ENSPVIP00000021283	ENSPVIP00000005632	ENSPVIP00000021283	ENSPVIP00000005632	annotation not available	Pulmonary surfactant-associated protein D-like.	0.673
ENSPVIP00000021283	ENSPVIP00000023878	ENSPVIP00000021283	ENSPVIP00000023878	annotation not available	annotation not available	0.998
ENSPVIP00000021283	LOC110083676	ENSPVIP00000021283	ENSPVIP00000005629	annotation not available	Pulmonary surfactant-associated protein D-like.	0.734
ENSPVIP00000021283	LOC110083680	ENSPVIP00000021283	ENSPVIP00000005628	annotation not available	PLIalpha-like protein.	0.734
ENSPVIP00000021283	LOC110083685	ENSPVIP00000021283	ENSPVIP00000005644	annotation not available	Pulmonary surfactant-associated protein A-like.	0.938
ENSPVIP00000021283	PCYT1A	ENSPVIP00000021283	ENSPVIP00000006615	annotation not available	Choline-phosphate cytidylyltransferase A isoform X1.	0.574
ENSPVIP00000023878	ENSPVIP00000005631	ENSPVIP00000023878	ENSPVIP00000005631	annotation not available	Pulmonary surfactant-associated protein D-like.	0.760
ENSPVIP00000023878	ENSPVIP00000005632	ENSPVIP00000023878	ENSPVIP00000005632	annotation not available	Pulmonary surfactant-associated protein D-like.	0.703