STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LSM14AProtein LSM14 homolog A. (462 aa)    
Predicted Functional Partners:
DDX6
Probable ATP-dependent RNA helicase DDX6.
   
 
 0.980
EDC4
Enhancer of mRNA-decapping protein 4 isoform X1.
    
 
 0.956
EIF4ENIF1
Eukaryotic translation initiation factor 4E transporter isoform X1.
   
 
 0.941
EDC3
Enhancer of mRNA-decapping protein 3.
    
 
 0.909
GARS1
Glycyl-tRNA synthetase.
    
   0.891
PRMT1
Protein arginine N-methyltransferase 1 isoform X1.
   
 
 0.869
DCP1A
MRNA-decapping enzyme 1A isoform X1.
   
 
 0.859
PATL1
DNA topoisomerase 2-associated protein PAT1.
   
 
 0.838
DCP1B
Decapping mRNA 1B.
   
 
 0.827
LSM1
U6 snRNA-associated Sm-like protein LSm1.
    
 
 0.821
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.