TMED1 protein (Pogona vitticeps) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TMED1

Transmembrane emp24 domain-containing protein 1. (233 aa)

Predicted Functional Partners:

TMED2

0.794

LOC110069798

0.782

TMED10

0.782

TMED4

0.678

TMED9

0.678

EEF1AKNMT

0.618

TM9SF4

0.482

ENSPVIP00000029293

0.482

TSR1

0.480

GNL3L

0.478

Your Current Organism:

Pogona vitticeps

NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EEF1AKNMT	ENSPVIP00000029293	ENSPVIP00000000041	ENSPVIP00000029293	Methyltransferase-like protein 13 isoform X1.	annotation not available	0.615
EEF1AKNMT	TM9SF4	ENSPVIP00000000041	ENSPVIP00000001527	Methyltransferase-like protein 13 isoform X1.	Transmembrane 9 superfamily member 4 isoform X1.	0.615
EEF1AKNMT	TMED1	ENSPVIP00000000041	ENSPVIP00000005921	Methyltransferase-like protein 13 isoform X1.	Transmembrane emp24 domain-containing protein 1.	0.618
ENSPVIP00000029293	EEF1AKNMT	ENSPVIP00000029293	ENSPVIP00000000041	annotation not available	Methyltransferase-like protein 13 isoform X1.	0.615
ENSPVIP00000029293	TMED1	ENSPVIP00000029293	ENSPVIP00000005921	annotation not available	Transmembrane emp24 domain-containing protein 1.	0.482
ENSPVIP00000029293	TMED2	ENSPVIP00000029293	ENSPVIP00000020293	annotation not available	Transmembrane emp24 domain-containing protein 2 isoform X1.	0.449
GNL3L	TMED1	ENSPVIP00000034940	ENSPVIP00000005921	G protein nucleolar 3 like.	Transmembrane emp24 domain-containing protein 1.	0.478
GNL3L	TSR1	ENSPVIP00000034940	ENSPVIP00000022133	G protein nucleolar 3 like.	Pre-rRNA-processing protein TSR1 homolog.	0.930
LOC110069798	TMED1	ENSPVIP00000013548	ENSPVIP00000005921	Transmembrane emp24 domain-containing protein 10-like.	Transmembrane emp24 domain-containing protein 1.	0.782
LOC110069798	TMED2	ENSPVIP00000013548	ENSPVIP00000020293	Transmembrane emp24 domain-containing protein 10-like.	Transmembrane emp24 domain-containing protein 2 isoform X1.	0.994
LOC110069798	TMED4	ENSPVIP00000013548	ENSPVIP00000020725	Transmembrane emp24 domain-containing protein 10-like.	Transmembrane emp24 domain-containing protein 4.	0.912
LOC110069798	TMED9	ENSPVIP00000013548	ENSPVIP00000034168	Transmembrane emp24 domain-containing protein 10-like.	Transmembrane emp24 domain-containing protein 9.	0.912
TM9SF4	EEF1AKNMT	ENSPVIP00000001527	ENSPVIP00000000041	Transmembrane 9 superfamily member 4 isoform X1.	Methyltransferase-like protein 13 isoform X1.	0.615
TM9SF4	TMED1	ENSPVIP00000001527	ENSPVIP00000005921	Transmembrane 9 superfamily member 4 isoform X1.	Transmembrane emp24 domain-containing protein 1.	0.482
TM9SF4	TMED2	ENSPVIP00000001527	ENSPVIP00000020293	Transmembrane 9 superfamily member 4 isoform X1.	Transmembrane emp24 domain-containing protein 2 isoform X1.	0.449
TMED1	EEF1AKNMT	ENSPVIP00000005921	ENSPVIP00000000041	Transmembrane emp24 domain-containing protein 1.	Methyltransferase-like protein 13 isoform X1.	0.618
TMED1	ENSPVIP00000029293	ENSPVIP00000005921	ENSPVIP00000029293	Transmembrane emp24 domain-containing protein 1.	annotation not available	0.482
TMED1	GNL3L	ENSPVIP00000005921	ENSPVIP00000034940	Transmembrane emp24 domain-containing protein 1.	G protein nucleolar 3 like.	0.478
TMED1	LOC110069798	ENSPVIP00000005921	ENSPVIP00000013548	Transmembrane emp24 domain-containing protein 1.	Transmembrane emp24 domain-containing protein 10-like.	0.782
TMED1	TM9SF4	ENSPVIP00000005921	ENSPVIP00000001527	Transmembrane emp24 domain-containing protein 1.	Transmembrane 9 superfamily member 4 isoform X1.	0.482