Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSPVIP00000005947SLA class II histocompatibility antigen, DQ haplotype D alpha chain-like. (186 aa)    
Predicted Functional Partners:
LOC110091135
Class II histocompatibility antigen, M alpha chain.
   
 0.995
CD74
HLA class II histocompatibility antigen gamma chain isoform X1.
   
 0.974
LOC110091149
Class II histocompatibility antigen, M beta 1 chain.
   
 0.965
LOC110071721
Class II histocompatibility antigen, M beta 1 chain-like.
   
 0.965
RPS14
Small subunit ribosomal protein S14e.
   
 0.930
LOC110084638
T-cell surface glycoprotein CD4-like isoform X1.
   
 0.926
MBP
Myelin basic protein.
    
 
 0.866
FGB
Fibrinogen beta chain.
   
   0.793
LOC110082605
Cathelicidin antimicrobial peptide.
    
 
 0.781
SNRPB
Small nuclear ribonucleoprotein-associated protein B-like.
    
   0.779
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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