Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
COL6A3Collagen type VI alpha 3 chain. (2888 aa)    
Predicted Functional Partners:
COL6A2
Collagen alpha-2(VI) chain isoform X1.
   
0.933
CD44
CD44 antigen isoform X1.
    
 0.906
ENSPVIP00000022672
annotation not available
     
 
0.900
ITGA1
Integrin alpha 1.
    
0.749
ITGA11
Integrin alpha 11.
    
0.740
ITGA2
Integrin alpha 2.
    
0.740
ITGA10
Integrin subunit alpha 10.
    
0.740
ITGB5
Integrin beta 5.
    
 0.736
ITGB3
Integrin subunit beta 3.
    
 0.736
ITGB1
Integrin beta-1 isoform X1.
    
 0.719
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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