Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
USH1CHarmonin isoform X1. (549 aa)    
Predicted Functional Partners:
USH1G
Usher syndrome type-1G protein.
   
 0.997
ANKS4B
Ankyrin repeat and SAM domain-containing protein 4B.
   
 0.967
CDH23
Cadherin 23.
   
 
 0.915
CDHR2
Cadherin-related family member 2.
   
 
 0.915
PCDH15
Protocadherin-15 isoform X1.
   
 
 0.911
CDHR5
LOW QUALITY PROTEIN: cadherin-related family member 5.
   
 
 0.911
USH2A
LOW QUALITY PROTEIN: usherin.
    
 
 0.889
GPR84
G protein-coupled receptor 84.
    
 
 0.884
BRCA2
Breast cancer type 2 susceptibility protein.
      
 0.807
SELENOS
Selenoprotein S.
      
 0.755
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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