STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SYDE1Rho GTPase-activating protein SYDE1 isoform X1. (638 aa)    
Predicted Functional Partners:
POLR2D
DNA-directed RNA polymerase II subunit RPB4.
    
   0.879
GCM1
Chorion-specific transcription factor GCMa.
      
 0.738
GEN1
Flap endonuclease GEN homolog 1.
      
 0.693
PPP4R3A
Serine/threonine-protein phosphatase 4 regulatory subunit 3A isoform X1.
      
 0.665
ERC1
ELKS/Rab6-interacting/CAST family member 1 isoform X1.
    
 
 0.654
ERC2
ELKS/RAB6-interacting/CAST family member 2.
    
 
 0.654
CRK
LOW QUALITY PROTEIN: adapter molecule crk.
      
 0.646
FCHSD2
F-BAR and double SH3 domains protein 2 isoform X1.
     
 0.644
GPHN
Gephyrin.
      
 0.622
DCAF13
DDB1- and CUL4-associated factor 13.
      
 0.621
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.