Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LHX5LIM/homeobox protein Lhx5. (464 aa)    
Predicted Functional Partners:
CCNK
Cyclin-K isoform X1.
    
   0.771
LDB1
LIM domain-binding protein 1 isoform X1.
    
 0.726
LDB2
LIM domain-binding protein 2 isoform X1.
    
 0.726
PAX8
Paired box protein Pax-8 isoform X1.
   
 0.673
FEZF1
FEZ family zinc finger 1.
    
 0.620
EMX1
Empty spiracles homeobox 1.
    
 0.594
EMX2
Homeobox protein EMX2 isoform X1.
    
 0.594
HOXA6
Homeobox protein HoxA/B/C6.
   
 0.582
PAX2
Paired box protein Pax-2 isoform X1.
   
 0.575
PAX5
Paired box protein Pax-5 isoform X1.
   
 0.575
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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