STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CHD6Chromodomain-helicase-DNA-binding protein 6. (2666 aa)    
Predicted Functional Partners:
CTNNB1
Catenin beta-1 isoform X1.
    
 0.739
LEO1
RNA polymerase-associated protein LEO1.
   
 
 0.634
ASH2L
Set1/Ash2 histone methyltransferase complex subunit ASH2 isoform X1.
    
 
 0.624
SSRP1
Structure-specific recognition protein 1.
    
 
 0.606
SUPT16H
FACT complex subunit SPT16.
   
 
 0.601
RBBP5
Retinoblastoma-binding protein 5 isoform X1.
    
 
 0.600
RTF1
RNA polymerase-associated protein RTF1 homolog isoform X1.
   
 
 0.593
ARID4B
AT-rich interactive domain-containing protein 4B isoform X1.
   
 0.564
SETD2
[histone H3]-dimethyl-L-lysine36 N-methyltransferase.
   
 0.557
ARID4A
AT-rich interactive domain-containing protein 4A isoform X1.
   
 0.549
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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