Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
POLIDNA polymerase iota isoform X1. (802 aa)    
Predicted Functional Partners:
PCNA
Proliferating cell nuclear antigen isoform X1.
   
 0.981
REV1
DNA repair protein REV1 isoform X1.
   
 0.978
RPS27A
Ribosomal protein S27a.
    
  0.946
UBC
Polyubiquitin-C.
   
  0.936
TP53
Cellular tumor antigen p53.
    
 
 0.934
REV3L
DNA polymerase zeta catalytic subunit.
   
 0.922
MAD2L2
Mitotic spindle assembly checkpoint protein MAD2B.
   
 0.895
RRN3
RRN3 homolog, RNA polymerase I transcription factor.
   
  
 0.874
LOC110072527
Ubiquitin-large subunit ribosomal protein L40e.
    
 0.861
LOC110072526
Ubiquitin-large subunit ribosomal protein L40e.
    
 0.861
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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