STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CASC4Protein CASC4. (468 aa)    
Predicted Functional Partners:
TM9SF3
Transmembrane 9 superfamily member 3.
   
  
 0.915
SMIM7
Small integral membrane protein 7.
      
 0.906
CCDC186
Coiled-coil domain-containing protein 186 isoform X1.
      
 0.905
VTI1A
Vesicle transport through interaction with t-SNAREs homolog 1A isoform X1.
     
 0.747
VTI1B
Vesicle transport through interaction with t-SNAREs homolog 1B isoform X1.
     
 0.703
CASC3
CASC3 exon junction complex subunit.
     
 0.698
GOLT1B
Vesicle transport protein GOT1B.
     
 0.646
TBC1D25
TBC1 domain family member 25 isoform X1.
      
 0.640
SPRYD3
SPRY domain-containing protein 3.
      
 0.640
CCDC134
Coiled-coil domain-containing protein 134 isoform X1.
    
 
 0.630
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.