STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
COL5A1Collagen type V/XI/XXIV/XXVII, alpha. (446 aa)    
Predicted Functional Partners:
COL11A1
Collagen type V/XI/XXIV/XXVII, alpha.
 
      0.824
COL9A2
Collagen type IX alpha 2 chain.
 
 
 
0.760
COL10A1
Collagen alpha-1(X) chain.
 
 
 
0.751
COL8A2
Collagen alpha-2(VIII) chain.
 
 
 
0.742
COL8A1
Collagen alpha-1(VIII) chain.
 
 
0.739
ENSPVIP00000006249
annotation not available
 
      0.617
LOC110087768
Protein HP-25 homolog 1-like.
  
 
  0.476
ENSPVIP00000020121
annotation not available
  
     0.473
ENSPVIP00000006715
annotation not available
  
     0.471
ENSPVIP00000027462
annotation not available
  
     0.469
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.