STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
VSX1Visual system homeobox protein 1. (244 aa)    
Predicted Functional Partners:
PTF1A
Pancreas transcription factor 1 subunit alpha.
      
 0.674
NXNL1
Nucleoredoxin-like protein 1.
   
  
 0.646
ENSPVIP00000002882
annotation not available
      
 0.638
ATOH7
Protein atonal homolog 7.
      
 0.637
BHLHE23
Basic helix-loop-helix family member e23.
   
  
 0.613
RCVRN
Recoverin.
   
  
 0.589
RLBP1
Retinaldehyde-binding protein 1.
      
 0.571
NR2E3
Nuclear receptor subfamily 2 group E member 3.
   
  
 0.539
LOC110078476
Calcium-binding protein 5 isoform X1.
      
 0.535
NYX
Nyctalopin.
      
 0.505
Your Current Organism:
Pogona vitticeps
NCBI taxonomy Id: 103695
Other names: P. vitticeps, ZMB 30101, central bearded dragon
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.